References

FST23

David S. Fischer, Anna C. Schaar, and Fabian J. Theis. Modeling intercellular communication in tissues using spatial graphs of cells. Nature Biotechnology, 41(3):332–336, March 2023. URL: https://doi.org/10.1038/s41587-022-01467-z, doi:10.1038/s41587-022-01467-z.

PSK+22

Giovanni Palla, Hannah Spitzer, Michal Klein, David Fischer, Anna Christina Schaar, Louis Benedikt Kuemmerle, Sergei Rybakov, Ignacio L. Ibarra, Olle Holmberg, Isaac Virshup, Mohammad Lotfollahi, Sabrina Richter, and Fabian J. Theis. Squidpy: a scalable framework for spatial omics analysis. Nature Methods, 19(2):171–178, Feb 2022. doi:10.1038/s41592-021-01358-2.

WAT18

F. Alexander Wolf, Philipp Angerer, and Fabian J. Theis. SCANPY: large-scale single-cell gene expression data analysis. Genome Biology, 19(1):15, February 2018. URL: https://doi.org/10.1186/s13059-017-1382-0, doi:10.1186/s13059-017-1382-0.