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Index
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Index
A
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C
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D
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E
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G
|
H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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V
A
a (ncem.estimators.Estimator attribute)
adj_type (ncem.estimators.Estimator attribute)
C
complete_img_keys (ncem.estimators.Estimator attribute)
cond_depth (ncem.estimators.Estimator attribute)
cond_type (ncem.estimators.Estimator attribute)
copy_best_model() (ncem.train.GridSearchContainer method)
covar_selection (ncem.estimators.Estimator attribute)
cv_ids (ncem.train.GridSearchContainer attribute)
cv_keys (ncem.train.GridSearchContainer property)
D
domains (ncem.estimators.Estimator attribute)
E
Estimator (class in ncem.estimators)
estimator (ncem.train.TrainModelCVAE attribute)
(ncem.train.TrainModelCVAEncem attribute)
(ncem.train.TrainModelED attribute)
(ncem.train.TrainModelEDncem attribute)
(ncem.train.TrainModelInteractions attribute)
(ncem.train.TrainModelLinear attribute)
EstimatorCVAE (class in ncem.estimators)
EstimatorCVAEncem (class in ncem.estimators)
EstimatorED (class in ncem.estimators)
EstimatorEDncem (class in ncem.estimators)
EstimatorGraph (class in ncem.estimators)
EstimatorInteractions (class in ncem.estimators)
EstimatorLinear (class in ncem.estimators)
EstimatorNoGraph (class in ncem.estimators)
evaluate_any() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
evaluate_any_posterior_sampling() (ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
evaluate_per_node_type() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
G
get_best_model_id() (ncem.train.GridSearchContainer method)
get_data() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
get_decoding_weights() (ncem.estimators.EstimatorEDncem method)
get_info() (ncem.train.GridSearchContainer method)
graph_covar (ncem.estimators.Estimator attribute)
graph_covar_names (ncem.estimators.Estimator attribute)
GridSearchContainer (class in ncem.train)
H
h_0 (ncem.estimators.Estimator attribute)
h_1 (ncem.estimators.Estimator attribute)
I
img_keys_all (ncem.estimators.Estimator property)
(ncem.estimators.EstimatorCVAE property)
(ncem.estimators.EstimatorCVAEncem property)
(ncem.estimators.EstimatorED property)
(ncem.estimators.EstimatorEDncem property)
(ncem.estimators.EstimatorGraph property)
(ncem.estimators.EstimatorInteractions property)
(ncem.estimators.EstimatorLinear property)
(ncem.estimators.EstimatorNoGraph property)
img_to_patient_dict (ncem.estimators.Estimator attribute)
init_estim() (ncem.train.TrainModelCVAE method)
(ncem.train.TrainModelCVAEncem method)
(ncem.train.TrainModelED method)
(ncem.train.TrainModelEDncem method)
(ncem.train.TrainModelInteractions method)
(ncem.train.TrainModelLinear method)
init_model() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
L
load_gs() (ncem.train.GridSearchContainer method)
load_target_cell_evaluation() (ncem.train.GridSearchContainer method)
log_transform (ncem.estimators.Estimator attribute)
M
max_nodes (ncem.estimators.Estimator attribute)
model_type (ncem.estimators.Estimator attribute)
ModelCVAE (class in ncem.models)
ModelCVAEncem (class in ncem.models)
ModelED (class in ncem.models)
ModelEDncem (class in ncem.models)
ModelInteractions (class in ncem.models)
ModelLinear (class in ncem.models)
module
ncem.__main__
ncem.estimators
ncem.models
ncem.train
N
n_domains (ncem.estimators.Estimator attribute)
n_eval_nodes_per_graph (ncem.estimators.Estimator attribute)
n_features_0 (ncem.estimators.Estimator attribute)
n_features_1 (ncem.estimators.Estimator attribute)
n_features_standard (ncem.estimators.Estimator attribute)
n_features_type (ncem.estimators.Estimator attribute)
n_graph_covariates (ncem.estimators.Estimator attribute)
n_node_covariates (ncem.estimators.Estimator attribute)
ncem.__main__
module
ncem.estimators
module
ncem.models
module
ncem.train
module
node_covar (ncem.estimators.Estimator attribute)
node_feature_names (ncem.estimators.Estimator attribute)
node_type_names (ncem.estimators.Estimator attribute)
node_types (ncem.estimators.Estimator attribute)
nodes_idx_all (ncem.estimators.Estimator property)
(ncem.estimators.EstimatorCVAE property)
(ncem.estimators.EstimatorCVAEncem property)
(ncem.estimators.EstimatorED property)
(ncem.estimators.EstimatorEDncem property)
(ncem.estimators.EstimatorGraph property)
(ncem.estimators.EstimatorInteractions property)
(ncem.estimators.EstimatorLinear property)
(ncem.estimators.EstimatorNoGraph property)
nodes_idx_eval (ncem.estimators.Estimator attribute)
(ncem.estimators.EstimatorCVAE attribute)
(ncem.estimators.EstimatorCVAEncem attribute)
(ncem.estimators.EstimatorED attribute)
(ncem.estimators.EstimatorEDncem attribute)
(ncem.estimators.EstimatorGraph attribute)
(ncem.estimators.EstimatorInteractions attribute)
(ncem.estimators.EstimatorLinear attribute)
(ncem.estimators.EstimatorNoGraph attribute)
nodes_idx_test (ncem.estimators.Estimator attribute)
(ncem.estimators.EstimatorCVAE attribute)
(ncem.estimators.EstimatorCVAEncem attribute)
(ncem.estimators.EstimatorED attribute)
(ncem.estimators.EstimatorEDncem attribute)
(ncem.estimators.EstimatorGraph attribute)
(ncem.estimators.EstimatorInteractions attribute)
(ncem.estimators.EstimatorLinear attribute)
(ncem.estimators.EstimatorNoGraph attribute)
nodes_idx_train (ncem.estimators.Estimator attribute)
(ncem.estimators.EstimatorCVAE attribute)
(ncem.estimators.EstimatorCVAEncem attribute)
(ncem.estimators.EstimatorED attribute)
(ncem.estimators.EstimatorEDncem attribute)
(ncem.estimators.EstimatorGraph attribute)
(ncem.estimators.EstimatorInteractions attribute)
(ncem.estimators.EstimatorLinear attribute)
(ncem.estimators.EstimatorNoGraph attribute)
O
output_layer (ncem.estimators.Estimator attribute)
P
patient_ids_bytarget (ncem.estimators.Estimator property)
(ncem.estimators.EstimatorCVAE property)
(ncem.estimators.EstimatorCVAEncem property)
(ncem.estimators.EstimatorED property)
(ncem.estimators.EstimatorEDncem property)
(ncem.estimators.EstimatorGraph property)
(ncem.estimators.EstimatorInteractions property)
(ncem.estimators.EstimatorLinear property)
(ncem.estimators.EstimatorNoGraph property)
patient_ids_unique (ncem.estimators.Estimator property)
(ncem.estimators.EstimatorCVAE property)
(ncem.estimators.EstimatorCVAEncem property)
(ncem.estimators.EstimatorED property)
(ncem.estimators.EstimatorEDncem property)
(ncem.estimators.EstimatorGraph property)
(ncem.estimators.EstimatorInteractions property)
(ncem.estimators.EstimatorLinear property)
(ncem.estimators.EstimatorNoGraph property)
plot_best_model_by_hyperparam() (ncem.train.GridSearchContainer method)
plot_target_cell_evaluation() (ncem.train.GridSearchContainer method)
predict() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
predict_embedding_any() (ncem.estimators.EstimatorEDncem method)
pretrain_decoder() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
R
run_ids_clean (ncem.train.GridSearchContainer attribute)
runparams (ncem.train.GridSearchContainer attribute)
S
save() (ncem.train.TrainModelCVAE method)
(ncem.train.TrainModelCVAEncem method)
(ncem.train.TrainModelED method)
(ncem.train.TrainModelEDncem method)
(ncem.train.TrainModelInteractions method)
(ncem.train.TrainModelLinear method)
save_time() (ncem.train.TrainModelCVAE method)
(ncem.train.TrainModelCVAEncem method)
(ncem.train.TrainModelED method)
(ncem.train.TrainModelEDncem method)
(ncem.train.TrainModelInteractions method)
(ncem.train.TrainModelLinear method)
select_cv() (ncem.train.GridSearchContainer method)
size_factors (ncem.estimators.Estimator attribute)
source_gs (ncem.train.GridSearchContainer attribute)
split_data_given() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
split_data_node() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
split_data_target_cell() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
steps_per_epoch (ncem.estimators.Estimator attribute)
T
target_cell_evals (ncem.train.GridSearchContainer attribute)
target_cell_indices (ncem.train.GridSearchContainer attribute)
target_cell_runparams (ncem.train.GridSearchContainer attribute)
train() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
train_aggressive() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
train_normal() (ncem.estimators.Estimator method)
(ncem.estimators.EstimatorCVAE method)
(ncem.estimators.EstimatorCVAEncem method)
(ncem.estimators.EstimatorED method)
(ncem.estimators.EstimatorEDncem method)
(ncem.estimators.EstimatorGraph method)
(ncem.estimators.EstimatorInteractions method)
(ncem.estimators.EstimatorLinear method)
(ncem.estimators.EstimatorNoGraph method)
TrainModelCVAE (class in ncem.train)
TrainModelCVAEncem (class in ncem.train)
TrainModelED (class in ncem.train)
TrainModelEDncem (class in ncem.train)
TrainModelInteractions (class in ncem.train)
TrainModelLinear (class in ncem.train)
V
validation_steps (ncem.estimators.Estimator attribute)
vi_model (ncem.estimators.Estimator attribute)
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